Wednesday 30 July 2014

How to parse MiRProf Results.

 MiRProf Results contains may unused information which might affect the effective analysis.

Here shows how to parse the MiRProf exported .csv files.

First get all the names of micro RNA from the file:

grep - All-Expression-hg19-MirBase.csv > mir.txt

 The get the corresponding Total number of reads:

grep Total All-Expression-hg19-MirBase.csv > Allnumber.txt

Then combine the two files on excel, then you are done.

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